For just simple auditory fidelity, every work channel should be properly time and phase aligned together, from a work-chain production point of view. If a certain effect is meant to be 'early' or 'late', (King Crimson's 'One More Red Nightmare' handclaps are slow as shit, deliberatley/ Bonham and Jones leaned way back on the beat, etc), that's completely different than channel coherence.
I'm pretty much positive that any latency in the LFE .1 channel was accidentally introduced through computer software/hardware glitches. Choosing to adjust LFE time domain delays should be done on the user's end, specific to correcting personal room/setup issues, not in the original source.
P.S.: Yeah, 10ms delay on the LFE channel is probably almost imperceptible, but it's still not properly aligned. From a purely objective point of view, I would just prefer for it to be correct, and in line with everything else. I just can't imagine anyone saying 'It sound's great, but let's just deliberately delay the LFE channel by a few milliseconds'.