I don't have the specifics on how the encode/decode process works, but whenever I convert a .MP4, .M4A, or .EC3 file to PCM I get only six channels as you say (the sides & rears are summed). However, If I decode said file with the DRP or just bitstream through my Denon S750 (configured for 7.1 rather than 5.1.2) I get the discrete sides & surround backs. The same goes for Apple Music: if my MacBook Pro is set for 7.1.4 in Audio MIDI Setup, I get all the channels. I can also get true 7.1 from Apple Music on the Apple TV by bitstreaming through the Denon AVR.
Did you think streaming Atmos was limited to 5.1.x? It can go all the way up to 9.1.6, assuming you have the necessary hardware. The only restriction is for legacy (non-Atmos) playback, you get 5.1 whereas Dolby TrueHD would give you 7.1 instead.